Multicenter standardization of PET data processing

William Jagust
University of California, Berkeley and
Lawrence Berkeley National Laboratory
Things to Standardize
Acquisition
Timing, subject state, radiopharmaceutical,
instrumentation
Reconstruction
Processing
Scanner differences
Radiopharmaceutical differences
Quantitation methodology
Standardizing Processing
Image Standardization
Orientation, voxel size, resolution
FDG
ROI selection
Amyloid Imaging
Tracers: [11C]PIB, [18F]Florbetapir,
[18F]Flutemetamol
Processing: ROI Selection, Reference regions,
normalization vs native space, templates vs
tailored
Effects of Processing: FDG
(ADNI MCI Patient)
Raw 30
min data
Baseline
36 month
follow up
Standard orientation,
voxel size
8 mm
Resolution
Standardized ROIs
Identification of ROIs from
voxelwise analyses in the
literature
Peak voxels plotted in MNI
coordinates, smoothed,
thresholded
Post
Cingulate
Gyrus
L Inf
Temporal
Gyrus
L Angular
Gyrus
R Angular
Gyrus
R Inf
Temporal
Gyrus
“Meta-ROIs”
Hypometabolic
Convergence
Index (HCI)
PALZ
T-sum
Landau et al
Neurobiol
Aging 2011
Proportion remaining nondemented
Composite “MetaROI” Performance
Hypometabolic
MCIs
Hazard ratio = 2.95
p = 0.02
Baseline FDG vs
ADAS-Cog Change
FDG Change vs
ADAS-Cog Change
Landau et al
Neurology
2010
Caroli et al,
J Nucl Med
2012
FDG-PET in ADNI2/GO (N=931)
60/259
23% positive
Frequency
52/209
25% positive
109/220
50% positive
227/243
93% positive
MetaROI average
1.22 threshold: 82% sensitivity,
70% specificity for AD vs
Controls (Landau et al,
Neurology 2010)
PIB
(2.12)
Florbetapir
(2.00)
PIB+/Florbetapir +
(MCI)
PIB
(1.19)
Florbetapir
(1.04)
PIB-/Florbetapir(Normal)
ADNI (Freesurfer) Processing
ADNI and Avid Processing
Avid Processing
ADNI PIB
(N=32)
GE PIB
(N=40)
ADNI
Florbetapir
(N=32)
GE
Flutemetamol
(N=40)
ADNI
Florbetapir
(N=324)
AVID Autopsy
Data
Comparing Tracers
1 same subjects studied with
both tracers
or
2 Compare 2 tracers to the
same third tracer
Comparing Methods
Analyze data 2 ways
ADNI (Freesurfer) Processing
Florbetapir and PIB in ADNI
• Freesurfer Processing
• Cerebellar Gray matter
Reference ROI
• Mean 1.5 years apart
•
•
•
•
Cortical ROI:
frontal, parietal,
cingulate,
temporal grey
matter average
N=32
6 normals
22 MCI (5 converted)
4 AD
Cerebellar Grey Reference ROI
PIB vs Florbetapir
Cerebellar Gray Matter Reference
Freesurfer Processing
Florbetapir
Threshold
1.28
PIB Threshold of 1.47 (Jagust et al, Neurology 2009)
PIB and Florbetapir Grey and White
Distributions
30
30
PIB White 1.54-2.46
PIB Gray 1-2.68
(mean ± 2stdev)
(min, max)
20
20
10
10
1
1.5
30
2
2.5
White Matter
Florbetapir White = 1.58 – 2.78
31
30
1.5
2
Gray Matter
(min, max)
20
20
10
10
1.5
2
3
Florbetapir Gray = 0.87 – 2.23
(mean ± 2stdev)
1
2.5
2.5
31
1.5
2
2.5
3
Freesurfer: Grey matter vs whole cerebellum
1.13
1.28
1.47 (PIB) = 1.28 (Florbetapir) = 1.13
(Florbetapir, Whole Cerebellum Reference)
We can convert from PIB to Florbetapir Values
We can convert from a cerebellar grey
reference to a whole cerebellar reference
How about different processing streams?
Avid also works up Florbetapir data - how
does their processing compare?
And….Avid has imaging-Neuropathology
correlations!
1.091.17
Joshi et al
J Nucl Med 2012:
1.10 = 95% CI upper interval for
subjects < 55
Clark et al, JAMA 2011
324 ADNI subjects
Freesurfer processing (whole cerebellar reference)
Avid processing (whole cerebellar reference)
1.11
1.10
ADNI GO/2 Florbetapir (N=602)
Frequency
56/194
29% positive
1.11 threshold
(ADNI Data
processed with
freesurfer and
cerebellar
reference)
89/212
42% positive
83/132
63% positive
51/64
80% positive
Florbetapir cortical mean
Effect of Reference Region
PIB-Florbetapir
Comparisons (so far)
Florbetapir (1.10)
Avid Processing
0.9
1.0
Florbetapir (1.13)
Freesurfer Whole
Cerebellum
1.1
Florbetapir (1.11)
Freesurfer
Whole
Cerebellum
1.2
1.3
Florbetapir (1.28)
Freesurfer
Cerebellar Gray
Autopsy Thresholds
1.4
1.5
PIB (1.47)
Freesurfer Cerebellar
Gray
[18F]Flutemetamol
AD
Control
40 Subjects (20 AD/20 MCI) Studied with PIB and Flutemetamol as
part of GE phase II study
PIB and Flutemetamol
1.47
1.47
Flutemetamol: Cerebellar Gray vs
Whole Cerebellum
1.20
1.47
Effect of Reference Region
PIB-Flutemetamol
Florbetapir to Flutemetamol
Florbetapir 1.11 (Clark Autopsy
Threshold) = PIB 1.27
PIB 1.27 = Flutemetamol 1.21
PIB, Florbetapir, Flutemetamol
Autopsy Thresholds
Florbetapir (1.10)
Avid Processing
0.9
1.0
Florbetapir (1.13)
Freesurfer Whole
Cerebellum
Florbetapir (1.11)
Freesurfer
Whole
Cerebellum
1.1
1.2
Flutemetamol (1.20)
Freesurfer Whole
Cerebellum
1.3
Florbetapir (1.28)
Freesurfer
Cerebellar Gray
Flutemetamol (1.20)
Freesurfer Whole
Cerebellum
1.4
1.5
PIB (1.47)
Freesurfer Cerebellar
Gray
Flutemetamol (1.47)
Freesurfer Cerebellar
Gray
PIB Cerebellar Gray Reference = 1.5
Florbetapir Cerebellar Gray Reference = 1.3
Flutemetamol Cerebellar Gray Reference = 1.5
Florbetapir Whole Cerebellar Reference = 1.1
Flutemetamol Whole Cerebellar Reference = 1.2
Florbetapir Autopsy Value = 1.1
Flutemetamol Autopsy value = 1.2
What is not the Case
Although numerical values can be compared, that
does not mean they are “correct” in detecting Ab
Tracer performance characteristics differ in ways
we still do not fully understand: false negative
and positive rates will differ
Factors such as instrument resolution, sensitivity,
reconstruction algorithms will affect results
These are research-focused analyses and are not
ready for clinical prime time
Summary
Pre-specified FDG ROIs are a statistically
powerful analytic tool
Analysis of amyloid images is most strongly
affected by reference region
Processing pipelines don’t seem to make much
difference
Thresholds for [18F] agents based on either PIB
or autopsy results are remarkably consistent
Acknowledgements
ADNI
Susan Landau
Bob Koeppe
Rick Margolin
Mark Schmitt
Core Leaders
Site PIs
Participants
Avid Radiopharmaceuticals
Dan Skrovonsky
Mark Mintun
Mike Pontecorvo
Abhinay Joshi
Chris Breault
GE Healthcare
Lennart Thurfjell
Ben Thomas (UCL)