32nd Annual J.P. Morgan Healthcare Conference January 2014 Ron Renaud President and CEO 1 Safe Harbor Statement This presentation includes forward-looking statements about our business, including without limitation statements regarding drug discovery, research and clinical development, regulatory approval processes and market opportunities. These forward-looking statements are subject to important risks and uncertainties that may cause actual events or results to differ materially from our current expectations for a number of important reasons, including those detailed in our publicly-available filings with the Securities and Exchange Commission. In particular, our expectations could be affected by, among other things, unexpected regulatory actions or delays, or government regulation generally. There can be no guarantee that development of any of our drug candidates described herein will succeed or that any new products will obtain necessary regulatory approvals required for commercialization or otherwise be brought to market. All forward- looking statements speak only as of the date of this presentation and, except as required by law, we undertake no obligation to update such statements. 2 Building a Leading Antiviral Franchise Idenix Strategy: Advancing All-Oral, Pan-Genotypic Combination HCV Regimens Nucleotide Prodrug Program - IDX21437: phase I/II ongoing ex-US IDX20963: ongoing preclinical work in response to FDA’s request Additional candidates under evaluation NS5A inhibitor program : Samatasvir (IDX719) - Favorable safety and potent pan-genotypic activity demonstrated in HCV-infected patients - Ongoing all-oral phase II 2-DAA HELIX-1 trial in combination with Janssen’s simeprevir demonstrated favorable safety and 85% SVR4 in 50 mg group - Ongoing all-oral phase II 3-DAA HELIX-2 trial with Janssen’s simeprevir and ritonavir-boosted non-nucleoside inhibitor (TMC647055) Idenix all-oral HCV combination: planned phase II pan-genotypic trial of samatasvir and nucleotide in 2014 3 Building a Leading Antiviral Franchise HCV Market: Significant Commercial Opportunity Large Market $200Bn+ cumulative market anticipated (2014-2030) Significant Commercial Opportunity Differentiated Focused on attractive profile (pan-genotypic, convenient) Long-Tail Long-tail along with differentiated positioning anticipated With a pan-genotypic all-oral HCV combination, Idenix will be wellpositioned to play a significant role in the future of HCV treatment 4 Building a Leading Antiviral Franchise Long Tail Anticipated in HCV: Patient Pool and Market Opportunity Anticipated To Last Until ~2030 Disease Paradigm – Because people infected with HCV are initially asymptomatic, it will take 15-20 years for them to be diagnosed/treated – New all-oral regimens will generate an increase in treated patients – New patients will continue to become infected Restrictive Managed Care – High cost of treatment may limit prescribing to specialists, especially outside the US – Managed care may restrict treatment to more advanced, harder-to-treat patient segments, particularly in the EU and emerging markets Capacity Constraints – Currently, high-prescribing physicians limited to treating HCV ~25-30% of the time Treatment of “already diagnosed” patients at anticipated levels would take > 10 years Source: Idenix market research ; >300 respondents (qual & quant), cross-geography (US, EU, Canada) & across stakeholder groups 5 Building a Leading Antiviral Franchise Significant Global Commercial Opportunity 15.0 16.6 17.1 $200 Billion+ Cumulative Potential 20.0 11.4 12.0 8.0 4.0 2.2 2.2 2.6 2.5 2.8 2.9 2.8 2.8 3.8 4.8 3.9 6.3 Estimated Global HCV Sales ($Bn) 16.0 0.0 '03 4.5 '05 '07 '09 '11 '13 '15 '17 4.1 4.0 Prevalent Diagnosed HCV Patient Population (M) 3.5 2.7 3.0 2.5 2.0 1.7 1.5 0.8 1.0 1.1 0.7 0.5 0.0 US EU5 Source: EvaluatePharma, Analyst reports, Idenix market research 6 Near-term projections suggest a sustained $1520B annual global HCV market (2016-2018) Building a Leading Antiviral Franchise JA Epidemiology suggests currently only ~3M diagnosed patients, ~5M undiagnosed (US, EU5, JA) Differentiated Profile: Idenix Targeting High Pan-Genotypic Efficacy for a Diverse Patient Population Market research indicates an effective pan-genotypic therapeutic is most relevant differentiator for next-generation HCV therapeutics Market analysis indicates limited competition with nucleotide-based regimens offering potential for high pan-genotypic efficacy Recent genotypic sub-typing indicates high regional variance – US/EU5 dominated by GT 1 but significant number (25-58%) of patients are nonGT 1 within these markets Region GT 1 GT 3 GT 4 42% 26% 17% North Am/ Latin Am/ Europe ↑↑ ↓ ↓ North Africa/ Middle East ↓ ↓ ↑↑ ↑ ↓ Global Asia Pacific Source: Idenix market research, Idenix, Razavi (AASLD 2013) Base-case assumed 95% efficacy in difficult to treat patients, 8 weeks of treatment duration, 6 pills QD, limited (G1) coverage, ribavirin back-bone, moderate tolerability concerns, and a simple prior authorization. 7 Building a Leading Antiviral Franchise Relative Prevalence by Region Despite a Competitive Market for All-Oral Combos, Limited Regimens with Pan-genotypic Potential Selected All-Oral HCV Combinations in Development with Launch Projected by 2018 Nuc Combo One Pill, Once a Day Pan-genotypic sofosbuvir + GS-5816 (Gilead) Nuc Combo One Pill, Once a Day Only Selected Genotypes Nuc Combo More than One Pill, Once a Day Only Selected Genotypes DAA Combo Lacking a Nuc More than One Pill, Once a Day Only Selected Genotypes [GT1] sofosbuvir + ledipasvir (Gilead) [GT2/3] sofosbuvir + RBV (Gilead) [GT1] ABT-450/ritonavir [GT1] MK-5172 + + ABT-267 + MK-8742 +/- RBV ABT-333 + [GT1b] faldaprevir + [GT1] daclatasvir + (Merck) RBV (AbbVie) deleobuvir + RBV asunaprevir + (Boehringer) BMS-791325 (Bristol) [GT1/4] simeprevir + TMC647055/ritonavir + samatasvir (Janssen / Idenix) Collaborations between companies More than One Pill, Once a Day Only Selected Genotypes Estimated Launch Timeline 2014 2015 2016 Note: Projected dates of major products assumes 100% probability of success. Pan-genotypic definition requires demonstrated class pangenotypic activity (nucs) or clinical activity across genotypes 1 through 4. Source: Company websites, analyst reports, clinicaltrials.gov, Idenix analysis 8 IDX21437 + samatasvir (Idenix) Building a Leading Antiviral Franchise [GT1] simeprevir + TMC647055/ritonavir + JNJ-56914845 (Janssen) [GT1] VX-135 + daclatasvir (Vertex / Bristol) 2017 [GT1/4] VX-135 + simeprevir (Vertex / Janssen) 2018 IDX21437: Next-Generation Uridine Nucleotide Prodrug Phase I/II Clinical Trial Ongoing Favorable preclinical safety profile ‒ Preclinical toxicology profile provides good safety margins for anticipated clinical doses ‒ Clean genotoxicity and cardiac safety assessments to date Potent, pan-genotypic activity in vitro High liver triphosphate levels generated in vivo Phase I/II clinical trial ongoing in multiple countries ex-US ‒ Phase I single- and multiple-dose portion complete ‒ 7-day proof-of-concept ongoing 9 Building a Leading Antiviral Franchise IDX21437: Favorable In Vitro Cytotoxicity Profile Minimal cytotoxicity in a large panel of mammalian cell types No evidence of mitochondrial toxicity Tissue/ Organ Species Cells/Cell Line Liver Human HepG2 Liver Human Huh-7 Liver Human, Monkey, Mouse, Rat Heart Cell State CC50 (µM) Treatment Duration IDX21437 sofosbuvira BMS-094a ACH-3422d P 3/11b/14c 58/345/ND 86/62b 3.2/ND/3.5 13.6/ND/ND P 3/6 177/463 >100/160 2.5/ND 32/ND Primary Hepatocytes NP 2 30/67/>100 >100 38/33/47/3.2 88 (Monkey) 48 (Rat) Human iCell™ Cardiomyocytes NP 12 >500 >500 1.1 - Kidney Human CAKI-1 P 3/11b >250/93 >50/112 1.3/7.1 - Skeletal muscle Human SJCRH30 P 3/11b >250/196 >50/213 0.21/0.60 - P = proliferating; NP = non-proliferating; ND = not done ain-house data on non-IDX compounds b11- or c14-day treatment was performed in galactose-containing media to increase potential drug-induced mitochondrial toxicity d Company presentation, May 30, 2013 10 Building a Leading Antiviral Franchise IDX21437: Phase I/II Clinical Trial Design A phase I/II study assessing single and multiple doses of IDX21437 in healthy volunteers and HCV-infected patients Healthy Volunteers 10-300 mg IDX21437 Single Dose Treatment-naïve, GT 1 10-300 mg IDX21437 Treatment-naïve, GT 1, Cirrhotic 150 mg IDX21437 Healthy Volunteers 300 mg IDX21437 Multiple Dose (7-day) Treatment-naïve, GT 1 50-300 mg IDX21437 Treatment-naïve, GT 2-6 50-300 mg IDX21437 Treatment-naïve, GT 1, Cirrhotic 150 mg IDX21437 11 Building a Leading Antiviral Franchise IDX21437: Phase I/II Study 7-day Proof-of-Concept Underway Single ascending dose portion of the phase I study in healthy volunteers and HCV-infected patients completed Multiple dose (7-day) cohort in healthy volunteers completed IDX21437 was safe and well tolerated with no patterns in adverse events or laboratory assessments observed Pharmacokinetics supports once-daily dosing and was similar between healthy volunteers and HCV-infected patients Favorable safety and antiviral activity profile supported initiation of 7-day proof-of-concept portion of the study which is underway Proof-of-concept study data expected 1H 2014 12 Building a Leading Antiviral Franchise IDX21437: Co-formulated with Samatasvir Commercially Attractive Formulation Developed co-formulated pill of IDX21437 and samatasvir Potential benefits of IDX21437 and samatasvir combination ‒ Only one other pan-genotypic combination of nucleotide/NS5A in development ‒ All-oral, one pill, once-daily dosing ‒ High barrier to resistance ‒ Safe and potent ‒ Low potential for drug-drug interactions Co-formulated IDX21437 + Samatasvir 13 Building a Leading Antiviral Franchise Samatasvir: Best-in-Class Profile Among HCV NS5A Inhibitors Strong preclinical profile - Potent, pan-genotypic activity - Favorable safety profile 300 EC50 vs 200 HCV replicon (pM) 100 - Low potential for drug-drug interactions Granted FDA fast track designation 0 1a 1b 2a Samatasvir 2a (virus) 3a 4a 5a Daclatasvir 3-Day proof-of-concept phase I/II clinical trial in 64 GT1-4 HCV-infected patients demonstrated safety and pan-genotypic activity Two ongoing 12-week phase II all-oral DAA combination HELIX clinical trials with Janssen Pharmaceuticals, Inc. through a non-exclusive collaboration evaluating samatasvir, simeprevir and TMC647055 14 Building a Leading Antiviral Franchise Part A HELIX-1 Phase II Clinical Trial Design n=~20 Treatment-naïve, GT 1b/4 50 mg samatasvir + 150 mg simeprevir + RBV n=~20 Treatment-naïve, GT 1b/4 100 mg samatasvir + 150 mg simeprevir + RBV n=~20 Treatment-naïve, GT 1b/4 150 mg samatasvir + 150 mg simeprevir + RBV Study weeks Week 12 (EOT) Week 16 (SVR4) Week 24 (SVR 12) Week 48 (SVR 24) Part B is currently enrolling exploratory arms designed to evaluate safety and antiviral activity of simeprevir and ribavirin combined with: - 25 mg dose of samatasvir in GT 1b-infected patients 100 mg dose of samatasvir in GT 6-infected patients 100 mg dose of samatasvir in additional GT 1b-infected patients Objectives: safety and tolerability, efficacy (primary SVR4 with supportive SVR12 and SVR24), pharmacokinetics and pharmacodynamics, emergence of resistance 15 Building a Leading Antiviral Franchise HELIX-1 Phase II Clinical Trial Part A Results Safety: well-tolerated with no treatment-related serious adverse events in the clinical trial to date Antiviral activity: n Rapid Virologic Response (RVR); Measured after 4 weeks of treatment (LOQ) End Of Treatment Response (EOT); Measured at end of 12-week treatment period (LOD) Sustained Virologic Response (SVR4); Measured 4 weeks after end of treatment (LOD) Samatasvir/Simeprevir Treatment Groups 50 mg/150 mg 100 mg/150 mg 150 mg/150 mg 20 21 22* 20/20 (100%) 20/21 (95%) 18/19 (95%) 18/20 (90%) 19/21 (90%) 11/19 (58%) 17/20 (85%) 16/21 (76%) 10/19 (53%) •Three subjects prematurely discontinued treatment within the first 3 weeks (1 lost to follow-up, 2 non-compliance) •LOQ = limit of quantitation (< 25 IU/mL); LOD=limit of detection (<10 IU/mL) 16 Building a Leading Antiviral Franchise HELIX-2 Phase II Clinical Trial Design All-oral 12-week 3-DAA Combination Regimen n=~20 Treatment-naïve or relapsers, GT 1 50 mg samatasvir + 75 mg simeprevir + 450 mg TMC647055/r + RBV n=~20 Treatment-naïve or relapsers, GT 1 50 mg samatasvir + 75 mg simeprevir + 450 mg TMC647055/r Study weeks Week 12 (EOT) Week 16 (SVR4) Week 24 (SVR 12) Week 36 (SVR 24) Ongoing clinical trial initiated in December 2013 Objectives: safety and tolerability, efficacy (primary SVR4 with supportive SVR12 and SVR24), pharmacokinetics and pharmacodynamics, emergence of resistance SVR4 data anticipated 2H 2014 Additional exploratory arms may be included 17 Building a Leading Antiviral Franchise Focus on Nucleotides as Cornerstone of HCV Treatment Intense development efforts of novel nucleotide prodrugs for > last 2 years ‒ Nucleotide chemistry and prodrug expertise ‒ Strong intellectual property position Nucleotide Chemistry Raised the bar for nucleotide discovery ‒ Novel bases, prodrugs and sugar moieties ‒ Improved characteristics of nucleotide prodrugs Prodrug Expertise Over 2,000 nucleotide prodrugs discovered ‒ IDX21437 phase I/II clinical trial ongoing Innovative and Focused Efforts ‒ Additional candidates under evaluation Follow-on nucleotides “Nuc-nuc” strategy Combination of nucleotide/NS5A is preferred pan-genotypic approach ‒ Idenix has assets for 2-DAA combination regimen in-house ‒ Suitable for safe, potent, once-daily fixed-dose combination Potential for application in non-HCV therapeutic areas 18 Building a Leading Antiviral Franchise Idenix - Beyond HCV Using Chemistry Expertise to Target New Therapeutic Areas Concerted effort underway on indications beyond HCV ‒ Leveraging our existing areas of expertise and library into new indications ‒ Exploring applications of 1) nucleotides and 2) prodrug technology ‒ Pursuing future indications while maintaining primary focus on HCV Infectious Diseases: Idenix chemical library screened ‒ Wide variety of viruses screened: flaviviruses, other RNA viruses, DNA viruses ‒ As an example, >160 compounds with non-HCV flavivirus inhibitory activity ‒ Significant antibacterial hits identified, antifungal screening ongoing 19 Building a Leading Antiviral Franchise Oncology: Exploring cytotoxic nucleotide prodrugs ‒ Prodrug approach to provide tissue specificity and overcome resistance mechanisms ‒ Ex vivo patient screening identified multiple active cytotoxic nucleotide prodrugs ‒ Further preclinical efficacy and tissue selectivity evaluation underway in vivo ‒ Potential for clinical evaluation of nucleotide prodrugs within 12 to 18 months Idenix - Beyond HCV Selected Data from Pilot Programs Infectious Diseases Oncology Virus >50% inhib at 10 μM 100% inhib at 10 μM >50% inhib at 1 μM Dengue 116 34 25 JEV 55 15 17 Yellow fever 13 5 2 West Nile 4 1 0 Rhinovirus 39 19 13 RSV 21 7 0 Influenza 13 3 0 SARS 9 2 0 HSV-1 34 13 4 Viable Hits Flaviviruses (includes pan-flavi hits) Other RNA viruses DNA virus Hits with Increasing Activity 9.9% hit rate – 281 unique compound hits from 2,848 selected representative compounds 20 Building a Leading Antiviral Franchise Emax (% of tumor cells remaining) Compound Library Virus Screening Ex Vivo Screening of Leukemia Cells from Patients Idenix Prodrug 1 Additional Idenix Prodrugs EC50 (µM) Currently marketed cytotoxic nuc (parent molecule of prodrugs) Active cytotoxic prodrugs identified against patient tumor cells Ongoing Intellectual Property Matters with Gilead Patent Infringement Litigation Patent Interference (Initiated by Idenix) Patent Interference (Declared by USPTO) Other 2 patent infringement lawsuits brought by Idenix (December 2013): 1 patent interference brought by Idenix (part of Delaware infringement lawsuit filed December 2013): USPTO has declared 2 patent interferences between: Gilead has filed 3 invalidity lawsuits against Idenix in various jurisdictions outside the US 1) Idenix v. Gilead, 1:13-cv13052; Idenix co-owned patents, 6,914,054 and 7,608,597; US District Court of Massachusetts 2) Idenix v. Gilead, 1:13-cv01987; Idenix co-owned patent, 7,608,600; US District Court of Delaware Idenix v. Gilead, 1:13-cv01987; asserts a claim for interfering patents between Idenix '600 patent and Gilead’s patent 8,415,322; US District Court of Delaware 1) Idenix’s US Patent Application 12/131,868 and Gilead’s US Patent 7,429,572; USPTO assigned Idenix junior party status for second phase (initiated Feb 2012) 1) Canada (June 2012) 2) Norway (Sept 2012) 3) Australia (Jan 2013) 2) Idenix's US Patent 7,608,600 and Gilead's US Patent Application 11/854,218; Idenix initially declared as senior party (initiated December 2013) Idenix will diligently and vigorously protect our investment in nucleoside drug discovery and our overall IP portfolio 21 Building a Leading Antiviral Franchise Financial Highlights $ Millions (unaudited) FYE Q1 Q2 Q3 2012 2013 2013 2013 Total Revenue $69.7 $0.8 $0.1 $0.02 R&D Expense $70.2 $24.0 $19.8 $21.7 G&A Expense $24.2 $7.5 $9.1 $8.6 ($32.4) ($30.7) ($28.9) ($34.0) Net Loss $ Millions As of December 31, 2013 Cash Balance 22 $122.0 Building a Leading Antiviral Franchise Significant 2014 Milestones Milestone Timeline IDX21437 phase I/II 7-day proofof-concept data 1H 2014 IDX21437 + samatasvir phase II Initiate phase II trial 2H 2014 IDX21437 + samatasvir phase II SVR4 2H 2014 HELIX-1: samatasvir+simeprevir SVR4 Q1 2014 HELIX-2: samatasvir+simeprevir+TMC647055/r SVR4 2H 2014 Idenix internal pan-genotypic combination Janssen collaboration (phase II programs) Goal: To be prepared for all-oral late-stage HCV fixed-dose combination studies by year-end 2014 23 Building a Leading Antiviral Franchise 24
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