doi:10.1016/j.jmb.2003.10.070 J. Mol. Biol. (2004) 335, 641–654 Molecular Mechanisms for Viral Mimicry of a Human Cytokine: Activation of gp130 by HHV-8 Interleukin-6 Martin J. Boulanger1, Dar-chone Chow1, Elena Brevnova1 Monika Martick1, Gordon Sandford2, John Nicholas2 and K. Christopher Garcia1* 1 Departments of Microbiology and Immunology, and Structural Biology, Stanford University School of Medicine Fairchild D319, 299 Campus Drive, Stanford, CA 94305-5124, USA 2 The Molecular Virology Laboratories, Sidney Kimmel Comprehensive Cancer Center Johns Hopkins University School of Medicine, Baltimore MD 21231-1000, USA Kaposi’s sarcoma-associated herpesvirus (KSHV, or HHV-8) encodes a pathogenic viral homologue of human interleukin-6 (IL-6). In contrast to human IL-6 (hIL-6), viral IL-6 (vIL-6) binds directly to, and activates, the shared human cytokine signaling receptor gp130 without the requirement for pre-complexation to a specific a-receptor. Here, we dissect the biochemical and functional basis of vIL-6 mimicry of hIL-6. We find that, in addition to the “a-receptor-independent” tetrameric vIL-6/gp130 complex, the viral cytokine can engage the human a-receptor (IL-6Ra) to form a hexameric vIL-6/IL-6Ra/gp130 complex with enhanced signaling potency. In contrast to the assembly sequence of the hIL-6 hexamer, the preformed vIL-6/gp130 tetramer can be decorated with IL-6Ra, post facto, in a “vIL-6-dependent” fashion. A detailed comparison of the viral and human cytokine/gp130 interfaces indicates that vIL-6 has evolved a unique molecular strategy to interact with gp130, as revealed by an almost entirely divergent structural makeup of its receptor binding sites. Viral IL-6 appears to utilize an elegant combination of both convergent, and unexpectedly divergent, molecular strategies to oligomerize gp130 and activate similar downstream signaling cascades as its human counterpart. q 2003 Elsevier Ltd. All rights reserved. *Corresponding author Keywords: gp130; molecular mimicry; KSHV/HHV-8; viral pathogenesis; protein –protein interactions Introduction Microbes have an extraordinary capacity to interfere with host protein functions in order to create conditions favorable for survival. This process can manifest itself in the form of “molecular mimicry”, whereby a pathogen, such as a virus, mimics the structure and/or function of an endogenous host protein.1 Viruses often express homologues of host cell signaling proteins, such as M.J.B., D.C. & E.B. contributed equally to this work. Present addresses: D. Chow, Department of Chemistry, University of Houston, 229 Fleming Building, Houston, TX 77204, USA; E. Brevnova, Department of Medicine, University of California, San Diego, School of Medicine, 200 W. Arbor Drive, San Diego, CA 921038382, USA. Abbreviations used: ITC, isothermal titration calorimetry. E-mail address of the corresponding author: [email protected] cytokines and cytokine receptors, to either antagonize a receptor– ligand interaction that may result in destruction of the virus, or activate a signaling process that will stimulate proliferation of the infected cell and amplification of the virus.2,3 Despite the importance of such occurrences to microbial pathogenesis, our knowledge about the structural biology of molecular mimicry of a viral receptor– ligand interaction is derived from only a few examples.4,5 Here, we examine in detail both the structural and functional basis of mimicry of the human immunoregulatory cytokine interleukin-6 (hIL-6) by Kaposi’s sarcoma-associated human herpesvirus 8. Human herpesvirus 8 (HHV-8) is a g-herpesvirus that has been linked to several lymphoproliferative disorders and malignancies, such as Castleman’s disease, primary effusion lymphoma, and Kaposi’s sarcoma.6 – 8 Like some other g-herpesviruses, HHV-8 has pirated an extensive array of host genes that are able to hijack various cellular processes to benefit its viability.9,10 One of 0022-2836/$ - see front matter q 2003 Elsevier Ltd. All rights reserved. 642 these pirated genes in HHV-8 is a homologue of hIL-6, termed viral IL-6 (vIL-6).11,12 Expression of vIL-6 in HHV-8 associated malignancies is known to induce cell proliferation and angiogenesis, and is thus suspected to play a role in the pathogenesis of this virus.13 – 15 VIL-6 induced signaling occurs via the shared cytokine signaling receptor gp130 that is coupled to the endogenous JAK/STAT pathway.16 – 19 The crystal structure of the vIL-6 signaling complex shows that two vIL-6 molecules homodimerize two gp130 receptors to form a tetramer (Figure 1).20 Each vIL-6 molecule presents two topologically distinct binding epitopes termed sites II and III. Site II is used to engage the D2D3 domains of gp130, also known as the cytokine binding homology region or CHR, while site III binds the D1 or IGD domain of an opposing gp130 molecule completing the tetramer. No structural intermediate of the vIL-6/gp130 complex has been observed and thus the mechanism of assembly remains unknown. The molecular assembly of the hIL-6 signaling complex is more intricate, requiring an additional specific a-receptor (IL-6Ra) not required for vIL-6 signaling.16,21 In addition to sites II and III used in the v-IL6-dependent oligomerization of gp130, hIL-6 incorporates an additional epitope termed site I that engages IL-6Ra.22,23 Furthermore, studies have shown that the assembly of the hIL-6 signaling complex proceeds in a coordinated sequence with distinct intermediates24,25 (Figure 1(A)). In the first step, hIL-6 interacts with IL-6Ra through its site I to form a bimolecular complex, which then interacts with gp130 CHR domain, resulting in a trimolecular intermediate.25 The final step in the assembly of the hexamer is the cross-linking of these heterotrimers through the D1, or Ig-like domains (IGD) of gp130. The disposition of all three receptor binding epitopes, including two unexpected additional “composite interfaces” between IL-6Ra and gp130 were revealed in the recent crystal structure of the hexameric hIL-6 receptor complex26 (Figure 1(C)) and established the basis for the required pre-complexation between hIL-6 and IL-6Ra. The conserved core topology between the vIL-6 and hIL-6 structures combined with functional data showing that vIL-6 blocks anti-viral interferon-a signaling27 leading to down-regulation of IL-6Ra surface expression indicates that vIL-6 has evolved into an effective mimic of hIL-6. Here, we report biochemical, biophysical and functional studies describing the basis of the “mimicry” of hIL-6 by the viral homologue and the contested role of IL-6Ra in vIL-6 signaling. We find that vIL-6 is, indeed, capable of utilizing IL-6Ra as part of an “enhanced” signaling complex, which appears to contradict a number of published reports.16,28,29 Our biochemical analysis of the assembly of the vIL-6 signaling complexes reveals both a “convergent” strategy utilizing IL-6Ra to produce a hexameric complex similar to Viral Mimicry of a Human Cytokine the human cytokine, and the previously described “divergent” IL-6Ra-independent strategy. We find, from detailed comparative analysis of the viral and human IL-6/gp130 interfaces, that each cytokine utilizes a unique structural solution for binding gp130, with vIL-6 having undergone a “hydrophobic enhancement” of its receptor binding sites in a manner akin to affinity maturation of an antibody.30 As an aggregate, our studies show that viral IL-6 has evolved a highly diverse and unexpected, but extremely effective, set of strategies to activate gp130, rather than simply copying the hIL-6 structural determinants. Results A key component enabling the studies described here was the availability of the crystal structures of the vIL-6/gp130 tetramer20 and the hIL-6/IL-6Ra/ gp130 hexamer,26 which were both determined recently in our laboratory (Figure 1(C)). These structures give us a unique opportunity to undertake a comparative analysis of a mammalian cytokine receptor complex and its viral mimic. A structural superposition of the vIL-6/gp130 tetramer onto the hIL-6 and gp130 components of the hIL-6 hexamer clearly shows a conserved core structural scaffold composed of two gp130 molecules lying anti-parallel with each other, and bridged by two cytokine molecules (Figure 2). A closer examination reveals that the global fit of the gp130 structures occurs throughout the site II and site III regions (Figure 2). However, while the site I is bound to IL-6Ra in the hIL-6 hexamer, this analogous region is exposed and accessible in the vIL6 tetramer. In principle, it is sterically capable of binding to IL-6Ra using a topological blueprint similar to that of the human hexamer. On the basis of this observation, we asked whether additional higher-order signaling assemblies exist for the viral cytokine, as for its human counterpart. We expressed a series of soluble constructs of vIL-6, gp130 and IL-6Ra in insect cells and determined the molecular masses by analytical ultracentrifugation. IL-6Ra was expressed as a twodomain construct (D2D3, 30.5 kDa), lacking the N-terminal domain (D1), which is known to be unnecessary for complex formation and signaling of hIL-624 (Figure 3(A)). Although vIL-6 alone can be expressed at low concentrations for functional studies, high-level expression of this recombinant protein has been unsuccessful, as observed previously,20 likely due to the extensive hydrophobic surface of vIL-6. A soluble vIL-6/gp130 complex formed by co-expression eluted as a single complex peak from a gel-filtration column (Figure 3(B)) with molecular mass of 120 kDa, consistent with the formation of a tetramer (theoretical mass 131.5 kDa) with two copies each of vIL-6 and gp130 (D1-D3), as observed in the crystallized complex.20 We then chromatographed the purified vIL-6/gp130 tetramer with saturating amounts of Viral Mimicry of a Human Cytokine 643 Figure 1. Assembly mechanism of human and viral IL-6 signaling complexes. (A) hIL-6 initially engages its specific receptor (IL-6Ra) through its site I to form a binary complex, which then engages gp130 at the elbow formed by the D2 and D3 domains through its site II binding epitope, generating an intermediate trimolecular recognition complex. In the final stage, the site III of hIL-6 engages the D1 domain of gp130, resulting in the formation of a hexameric activation complex. (B) Signaling via the vIL-6 activation complex is independent of an a receptor. The activation complex consists of a tetramer with two copies each of vIL-6 and gp130 D1-D3. (C) Schematic and CPK models of the atomic structure of vIL-6/gp130 (D1-D3)20 and hIL-6/IL-6Ra/gp130(D1-D3)26 signaling complexes as seen from a side-view. CPK models were generated with MOLSCRIPT49 and Raster3D.50 IL-6Ra (Figure 3(C)), and the mass of the peak was determined to be , 197 kDa, consistent with the formation of a vIL-6 hexamer (theoretical mass of 196 kDa) (two copies each of vIL-6, gp130 and IL6Ra) similar in stoichiometry to the hIL-6 signaling complex.25,26 Thus, it is quite clear that the vIL-6 tetramer is capable of incorporating IL-6Ra into a hexameric assembly with high affinity. We then asked whether this biochemical result is functionally relevant. IL-6Ra can influence signaling by vIL-6 To investigate the effect of IL-6Ra on vIL-6 signal transduction, we carried out transient transfection acetylation assays in HEK293T cells in which gp130 and vIL-6 were co-expressed with a STATresponsive CAT reporter, pa2M-CAT. In this assay, signal transduction is measured as the conversion of substrate ([14C]chloramphenicol) to acetylated forms, which are separated by thin-layer chromatography, and radioactivity in the “spots” counted to obtain the percentage acetylation.31 An increase in signaling was detected in the three-way co-expression of vIL-6, gp130 and IL-6Ra relative to the co-expression of vIL-6 and gp130 alone (Figure 4(A)). Furthermore, by systematically increasing the amount of IL-6Ra expressed we 644 Viral Mimicry of a Human Cytokine Figure 2. Top view of the vIL-6/gp130 (D1-D3) tetrameric20 and hIL-6/IL-6Ra/gp130(D1-D3) hexameric26 signaling complexes and a least-squares superposition based on the gp130 molecules showing the overall conserved tetrameric core between the two complexes. A zoomed-in view showing the structural conservation of site II, formed between the A and C helices of human and viral IL-6 and the D2 and D3 domains of gp130 and site III formed by the tip of the four-helix bundle of human and viral IL-6 and the D1 domain of gp130. Gp130 in the vIL-6 and hIL-6 complexes are colored gold and blue, respectively. vIL-6 is colored red, hIL-6 green and IL-6Ra colored cyan. showed that the activity of vIL-6 was enhanced in a dose-dependent manner (Figure 4(B)) by IL-6Ra, consistent with its functional participation in vIL-6 signal transduction. As it has been reported that vIL-6 can effect an autocrine induction of hIL-6 in certain cell lines, which would complicate interpretation of the previous results,32 we tested for vIL-6-induced, or constitutive, hIL-6 expression in HEK293T cells. These data (Figure 4(C)) confirm that no detectable or functionally significant levels of hIL-6 were present in our vIL-6-transfected HEK293T cultures (see Materials and Methods). Therefore, the ability of IL6Ra to enhance vIL-6 signaling is due to direct effects on vIL-6-induced signaling complex formation. The vIL-6 hexamer assembles through a divergent mechanism The gel-filtration experiments, combined with the functional assay, indicate that IL-6Ra is biochemically and functionally incorporated into the vIL-6 signaling complex. However, neither experiment addresses the question of assembly mechanism. Is IL-6Ra binding to a preformed tetramer of vIL-6 and gp130? Or is the interaction resulting from a reorganization and re-equilibration of the three-component complex, resulting in a hexamer? Our previous experiment (Figure 3) suggests that assembly of the vIL-6 hexamer does not follow the sequential pathway used by hIL-6 (Figure 1(A)), as the viral tetramer lacking IL-6Ra is stable: hIL-6 has no measurable interaction with gp130 unless initially pre-complexed with IL-6Ra. Despite several attempts to co-express vIL-6 with IL-6Ra, we were unable to demonstrate bimolecular complex formation (data not shown), which would represent the analogous first step (IL-6 þ IL-6Ra) in the assembly of the hIL-6 hexamer. To test whether IL-6Ra was able to “decorate” a pre-formed vIL-6/ gp130 tetramer, we used gel mobility-shift assays with native gel electrophoresis (Figure 5(A)). On the native gel, the vIL-6/gp130 tetramer migrates as a focused band, while IL-6Ra runs as a series of diffuse bands possibly due to conformational or glycosylation heterogeneity. The addition of increasing amounts of IL-6Ra to the vIL-6/gp130 tetramer resulted in a distinct band shift that is saturated at a twofold molar excess of IL-6Ra, consistent with an assembly mechanism in which two molecules of IL-6Ra decorate a preformed vIL-6/ gp130 tetramer to form the hexamer (Figure 3(C)). Dissecting the vIL-6 hexamer: a thermodynamic characterization of To further solidify this unexpected mechanism IL-6Ra interaction, we characterized the Viral Mimicry of a Human Cytokine 645 Figure 3. Biochemical and biophysical characterization of IL-6Ra, vIL-6/gp130 (D1-D3), and vIL-6/IL-6Ra (D2-D3)/ gp130 (D1-D3). Each panel contains a chromatogram from an FPLC Superdex200 gel-filtration column, SDS-PAGE of the peak fractions and an analytical ultracentrifugation plot. (A) IL-6Ra (D2-D3) was purified as a single homogeneous peak with molecular mass of 30.5 kDa. (B) Co-expression of vIL-6 and gp130 (D1-D3) resulted in a purified complex with molecular mass of 120 kDa, consistent with a tetramer with two copies each of vIL-6 and gp130. (C) Mixture of IL-6Ra and tetramer of vIL-6 and gp130 (D1-D3) produced a complex with molecular mass of 197 kDa consistent with a hexamer with two copies each of IL-6Ra, vIL-6 and gp130 (D1-D3). thermodynamics of IL-6Ra interaction with the vIL-6 tetramer, using isothermal titration calorimetry (ITC), which measures the free energy of an interaction ðDGÞ and the component enthalpy ðDHÞ; from which entropy can be derived. Figure 5(B) shows representative ITC traces obtained by titrating the tetrameric vIL-6/gp130 complex against IL-6Ra at different temperatures. At 5 8C (278 K), the interaction between IL-6Ra and the pre-formed vIL-6/gp130 tetramer shows an unfavorable enthalpy of þ 6.2 kcal/mol (1 cal ¼ 4.184 J), and favorable entropy of þ 58 cal/(mol K). The large favorable entropy is consistent with the expulsion of water molecules that would be expected from the hydrophobic surface of vIL-6. Overall, the interaction has a Gibbs free energy ðDGÞ of 2 10 kcal/mol and a binding affinity of KD , 22 nM: In order to assess the extent of enthalpy – entropy compensation, we increased the temperature to 26 8C (299 K), which shifts the thermodynamic profile of the reaction to be enthalpy driven ðDH ¼ 27:1 kcal=molÞ with a significantly smaller, yet still favorable, entropic contribution ðDS ¼ 12:3 cal=ðmol KÞÞ: Importantly, the binding stoichiometry of IL-6Ra titrated into the tetrameric complex of vIL-6/gp130 shows that two IL-6Ra receptors bind to each vIL-6/gp130 tetramer consistent with our previous biochemical 646 Viral Mimicry of a Human Cytokine Figure 4. Influence of IL-6Ra on signal transduction by vIL-6. STAT-CAT reporter based transient transfection assays in HEK293T cells were used to measure signal transduction by vIL-6. (A) The increase in signaling of vIL-6 in the presence of IL-6Ra. (B) The dose-dependency of increasing IL-6Ra expression vector (0.25, 0.50 and 0.75 mg; empty vector (pEFBOS) was used as the negative control and to normalize DNA totals) on vIL-6 signaling. (C) Western blot analysis for the detection of hIL-6 in transfected cell culture media. Human IL-6 levels were correlated with reporter activation by transfecting cells with 0.25, 0.75 and 1.50 mg (lanes b, c and d; lane a represents the empty vector) of cytokine expression vector and quantifying hIL-6 in cell media (40 ml) against rhIL-6 standards (0.1, 1.0 and 10.0 ng; lanes h, i and j). Functionally significant levels of hIL-6 were not present in the vIL-6-expressing cell cultures, ruling out the possibility that effects of IL-6Ra are due to induced hIL-6 (lanes d, e and f). data (Figures 3 and 5(A)). Thus, the viral hexamer assembles into a faithful mimic of the human hexamer. To determine whether protonation/deprotonation events occur during assembly of the vIL-6 hexamer, as has been suggested for hIL-6 and IL-6Ra, we measured the interaction between the vIL-6/gp130 tetramer and IL-6Ra in several different buffer systems that display a range of ionization enthalpies. The plot of the apparent enthalpies versus buffer ionization enthalpies shows a linear relationship with a slope of approximately 2, consistent with two protons liberated or absorbed per hexamer, or one per unique site I binding epitope (Figure 5(C)). These measurements are consistent with structural observations where a conserved arginine residue is centrally disposed on helix D (Figure 7(A), blue residue) of the site I binding epitope of vIL-6. These titrations were also measured at several different temperatures in order to calculate the heat capacity DCp (Figure 5(D)), which is a measure of exposure, or burial, of hydrophobic surface in a polar solvent. In the absence of complete structural information, buried surface can be calculated based on the empirical relationships between heat capacity DCp ¼ 0:45Aapol 2 0:26Apol and enthalpy DH ¼ 28:44Aapol þ 31:4Apol :33 Using these parameters, we calculated the total buried surface area between the site I binding epitope of the ˚ 2. The vIL-6 tetramer and IL-6Ra to be , 2000 A overall buried surface is somewhat higher compared to normal buried surface area for typical rigid body interactions.34 This suggests that IL6Ra contacts additional epitopes on the tetramer other than vIL-6, possibly in a similar fashion observed in the hIL-6 hexamer26 where the upper, or D2 domain, of IL-6Ra contacts (buried surface ˚ 2) the D1 domain of gp130 to form area , 500 A site IIIb (Figure 6(C)). Importantly, titrations of IL6Ra against free soluble gp130 (D1-D3) showed no detectable interaction (data not shown). Hence, any additional contact between IL-6Ra and gp130 is only enabled by the presence of the cytokine. Therefore, we devised a strategy to test the possible role of this IL-6Ra – gp130 interaction, within the viral hexamer, using functional assays and mutagenesis. Rescue of site III mutation by IL-6Ra Our strategy was to mutate a central site III interface residue on vIL-6, and then ask whether the addition of IL-6Ra would “rescue” this interaction, presumably through site IIIb. Our experiments utilized functionally abrogated, site IIImutated, vIL-6, vIL-6.15 (Trp144 mutated to Gly). Trp144 forms the major hydrophobic contact with gp130 D1 (Figure 6(A)),20 and therefore is required for stable interactions between vIL-6 Viral Mimicry of a Human Cytokine 647 Figure 5. (A) Native gel binding characterization of IL-6Ra with the preformed vIL-6/gp130 (D1-D3) tetramer. A constant amount (3 mg) of vIL-6/gp130 (D1-D3) complex was mixed with an increasing amount of IL-6Ra. The leftmost and rightmost lanes serve as controls containing only monomeric IL-6Ra and the vIL-6/gp130 tetramer, respectively. The second lane from the right shows that most of the tetramer complex was shifted to the higher molecular mass complex at a stoichiometric ratio of vIL-6/gp130 to IL-6Ra (D1-D3) of approximately 23 pmol:43 pmol or 2:1. Isothermal calorimetric titrations of the preformed vIL-6/gp130 (D1-D3) tetramer complex against IL-6Ra. (B) Titration curves are shown for the vIL-6/gp130 complex into IL-6Ra at 5 8C (278 K) and 26 8C (299 K). The curves are fit with a least-squares algorithm for a one-site binding model with the program ORIGIN 5.0. (C) A plot of apparent enthalpy versus the buffer ionization enthalpy at 26 8C showing that approximately two protons are liberated when two molecules of IL-6Ra bind the preformed vIL-6/gp130 tetramer. The ionization enthalpy for the different buffers are as follows: Hepes buffer (filled triangle), 4.99 kcal/mol; a mixture of 10 mM cacodylate and 20 mM Tris buffer pH 7.6 (filled diamond) has a calculated composite ionization enthalpy of 3.2 kcal/mol; Pipes buffer (open triangle), 2.72 kcal/mol; cacodylate buffer pH 7.2 (filled circle), 2 0.47 kcal/mol. (D) A plot of DH versus temperature for experiments carried out in three different buffer systems with the same data point designations described above. The average change in heat capacity ðDCp Þ derived from the slope of each curve is 2 510 cal/mol (contact site)/K. site III and gp130 IGD. We reasoned that if IL-6Ra can form part of the signaling complex and stabilize vIL-6/gp130 hexamers, then IL-6Ra co-expression with gp130 and the inactive vIL-6.15 site III mutant in cell culture might enable significant signal transduction. Consistent with previous data,19,35 vIL-6.15 was unable to effect efficient activation of a STAT-CAT reporter in HEK293T cells over-expressing gp130, whereas wild-type vIL-6 activated the reporter by around 19-fold (Figure 6(B)). However, over-expression of IL-6Ra along with gp130 and vIL-6.15 allowed activation of STAT signaling to around 50% of that achieved with vIL-6 under the same conditions (Figure 6(B)). These data suggest strongly that IL-6Ra can form part of the vIL-6induced signaling complex and compensates in large part for the weakened site III-IGD interactions affected by the Trp144Gly substitution in vIL-6.15. 648 Viral Mimicry of a Human Cytokine Figure 6. (A) Ribbon diagram of the vIL-6 site III:gp130 IGD interaction interface showing the position of the altered Trp residue in site III-altered variant vIL-6.15 (Trp144Gly). (B) Reporter-based transfection assays were carried out using vIL-6.15 to determine the functional effects of IL-6Ra on signal transduction through over-expressed gp130: 0.5 mg of each receptor subunit expression vector was used per transfection. Rescue of vIL-6.15 by IL-6Ra indicated stabilization of gp130:vIL-6.15 complexes by the a-subunit. (C) Zoomed-in view showing site IIIb in the hIL-6 hexamer26 formed by the D1 domain of gp130 and the D2 domain of IL-6Ra. Discussion The ability of viruses to mimic host cell signaling proteins, such as cytokines, has emerged as an important paradigm in viral pathogenesis. HHV-8 encodes a homologue of human IL-6, known as viral IL-6 that mediates its effects through the shared signaling receptor gp130,21,35 but does not require pre-association with an a receptor. Although some studies have suggested a role for human IL-6Ra in vIL-6 signaling,18,19,35,36 several recent studies have been unable to show functional participation of IL-6Ra association with vIL-6 and gp130.16,28,29 From the biochemical and biophysical analysis presented here, we have clearly shown that IL-6Ra can be incorporated into a vIL-6/IL6Ra/gp130 hexameric complex and that the addition of IL-6Ra enhances vIL-6 induced signaling. With these biochemical and functional data in hand, we can revisit the crystal structures to establish the structural basis for the vIL-6 molecular mimicry of hIL-6. Using our superimposed model of the vIL-6 tetramer20 onto the hIL-6 hexamer,26 we were able to identify structurally conserved residues of the site I epitopes of human and viral IL-6 (Figure 7(A)). The most striking observation is a conserved centrally disposed arginine residue (Arg179 on hIL-6, and Arg166 on vIL-6, blue residues),37 – 39 which, when mutated in hIL-6, is known to ablate receptor binding.39 Furthermore, mutation of Arg166 (blue residue) in vIL-6 abrogates signaling of an engineered “IL6Ra-dependent” vIL-6 variant.19 The participation of Arg166 on the site I of vIL-6 in the binding to IL-6Ra is also consistent with the thermodynamic data presented here showing that a proton is liberated or absorbed per site I binding interface. Interestingly, the affinity between IL-6Ra and the vIL-6/gp130 tetramer ðKD , 20 nMÞ is similar to that of IL-6Ra and hIL-6 ðKD , 21 nMÞ; consistent with the viral and human cytokines sharing a key similar centrally disposed hotspot residue involved in IL-6Ra-binding. Chemistry of the cytokine mimicry The overall surface chemistries of the receptorbinding epitopes of human and viral IL-6 are, however, very different from one another, despite the contact residues occupying similar positions in the sequence alignment (Figure 8(A)). Thus, the two cytokines appear to have evolved unique binding chemistries to interact with gp130, rather than the virus simply copying the hIL-6 receptor binding mode, as seen for a cmvIL-10 homologue.5 The site II residues of vIL-6 are strikingly hydrophobic (Figure 7(B), green surface). Amidst the vIL-6 site Viral Mimicry of a Human Cytokine Figure 7. Structural comparison showing the contact residues of the site I, II and III binding epitopes of human and viral IL-6. (A) vIL-6 cytokine is shown in green and hIL-6 in purple. For vIL-6, the site I residues predicted from our IL-6Ra docking studies are shown. Residues colored in blue contribute the most buried surface area at each molecular interface as calculated from the Protein – Protein Interaction (PPI) server (http://www.biochem.ucl.ac.uk/bsm/PP/server). The remaining residues that form the molecular interface are colored yellow. The site I residues shown for vIL-6 are colored orange because they were identified on the basis of a docked model with IL-6Ra following a leastsquares superposition of the conserved cores of the vIL-6/gp130 tetramer20 and the hIL-6/IL-6Ra/gp130 hexamer.26 (B) Same view as in (A) but a surface representation showing the chemical nature of the interface residues of human and viral IL-6 with hydrophobic residues colored as green surface and polar residues colored as red surface. II epitope, two bulky tryptophan residues (Trp18 and Trp21, Figure 7(A), blue residues) contribute 30% of the total buried surface area in complex with gp130, and form a broad hydrophobic patch on helix A (Figure 7(A) and (B)). The site II epitope of hIL-6 is significantly more polar (Figure 7(B), red surface) with a single, centrally disposed tyrosine residue (Tyr31 Figure 7(A), blue residue), which, from mutational studies is known to play an important role in receptor binding.40 Despite different surface chemistries of the site II epitopes of human and viral IL-6 (Figure 7(B)), these cytokines contact primarily the same core shared region on gp130 (Figure 8(B), red surface mapped on gp130 D2D3). The most prominent buried contact residue on gp130 engaged by the site II of human and viral 649 IL-6 is Phe169, which is known to be critical to ligand engagement for all gp130-cytokines,36,41 – 43 followed by the shared residues Val170 and Trp142 for vIL-6,33 and Ser165 for hIL-6 (Figure 8(B)). Overall, the unique surface area of gp130 utilized by each cytokine amounts to no more than 10% of the total buried surface in the site II molecular interfaces (i.e. 90% shared). The site III of both human and viral IL-6 incorporates tryptophan (hIL-6, Trp157; vIL-6, Trp144; Figure 7(A), blue residues) and leucine (hIL-6, Leu57; vIL-6, Leu41; Figure 7(A), blue residues) as the most buried residues when bound to gp130, with Trp144 having been our target residue to establish the functional incorporation of IL-6Ra into the vIL-6 hexamer (Figure 6). Unlike the site II binding site, however, the site III binding inter˚ 2) bury sig˚ 2) and vIL-6 (484 A faces of hIL-6 (789 A nificantly different amounts of surface area when bound to the D1 domain of gp130 (Figure 8(B)). Overall, hIL-6 buries an additional 50% of surface area relative to vIL-6. Furthermore, although both cytokines use a core shared region on the gp130 D1 domain, they rely more heavily on unique patches of gp130, especially for hIL-6, where more than one-third of the buried surface area maps to unique contact residues on gp130 (Figure 8(B), gp130 D1 red surface shared, blue surface unique to hIL-6, and green surface unique to vIL-6). Thus, while the site II of gp130 is largely shared, the site III on the D1 domain is largely unique in their interactions with the viral and human cytokine. From these structural observations (Figures 7 and 8), we can conclude that the site II and III epitopes of vIL-6 use extensive hydrophobic surfaces to engage gp130. In fact, the percentage hydrophobic content of site II in going from hIL-6 to vIL-6 increases from 32% to 75%, respectively, and increases from 49% to 84% at site III. Hence, “IL-6Ra independence” of vIL-6 is undoubtedly due to the dramatic hydrophobic enhancement of the site II and III binding epitopes relative to hIL-6. Thus, the parsing of energetics between the viral and human cytokine are unique, and vIL-6 does not simply “mimic” hIL-6. This situation is quite different from a relevant comparative example, the complex of human cytomegalovirus IL-10 bound to soluble human IL-10Ra.5 In that complex, the viral cytokine uses essentially the same structural epitope as hIL-10. The cytokine residues contacting the receptor are identical between the viral and human cytokines. Thus, the cmvIL-10 is a clear case of molecular mimicry, whereas the vIL-6 mechanism of mimicry appears much less obvious. In conclusion, we find that HHV-8 vIL-6 has an unexpectedly complicated molecular mechanism to achieve mimicry of hIL-6. Evolutionary biologists use the terms “convergent” and “divergent” evolution to reflect whether an organism uses a similar or different pathway to achieve a similar functional endpoint to a related organism or species. In the case of vIL-6, there appear to be 650 Viral Mimicry of a Human Cytokine Figure 8. (A) Structure-based sequence alignment of human and viral IL-6.51 Green shaded boxes indicate identical residues and residues that form the site I, II and III epitopes are designated with a 1, 2, or 3, respectively. (B) Contact residues of the site II and III interfaces of gp130 displayed graphically on a vertical histogram showing relative buried ˚ 2). Residues colored in blue are exclusive to hIL-6 binding, residues in red are shared between hIL-6 surface area (in A and vIL-6 and residues in green are exclusive to vIL-6. Residues listed in the histogram are also mapped onto the surface of gp130 domains D2 D3 for site II and domain D1 for site III using the same color scheme. 651 Viral Mimicry of a Human Cytokine Figure 9. Assembly pathways of vIL-6 and hIL-6 signaling complexes. (A) Divergent signaling solution of the vIL-6 tetramer. (B) Divergent and convergent assembly pathways to form the vIL-6 hexamer. (C) Assembly pathway for the hIL-6 hexamer. two divergent pathways to activate gp130 relative to human IL-6 (Figure 9): one involves vIL-6/ gp130 tetramer formation (Figure 9(A)), the other involves the post-tetramer recruitment of IL-6Ra into a hexamer (Figure 9(B)), which contrasts to the cytokine pre-complexation required for human IL-6. The possibility remains that vIL-6 also uses a convergent mechanism during assembly of the hexamer by complexing with IL-6Ra prior to engagement of gp130 (Figure 9(B)). The multiplicity of assembly pathways of the viral cytokine versus the human also endows vIL-6 with great flexibility to activate gp130 on cells bearing IL-6Ra in a “regulated”, or tissue-specific, fashion as well as cells that do not express this receptor. The role of vIL-6 in the pathogenesis of Kaposi’s sarcoma, as well as other lymphoproliferative disorders, is gaining increasing attention. Ultimately, the structural information about this cytokine may have utility in the design of antagonists in an effort to diminish the unregulated proliferative effects of vIL-6 on tumor cells. Materials and Methods Expression constructs and baculovirus preparation of vIL-6 and IL-6Ra The DNA fragment corresponding to the vIL-6 mature fragment was generated by PCR using the forward primer 50 ATG CAA GGA TCC CCT CCT GGT AGA 652 ATT CCC CCC C (Bam HI site) and reverse primer 50 ATG CAA TCT AGA TCA GTG ATG GTG ATG GTG ATG CAT TTG CCG AAG AGC CCT CAG (Xha I site). The construct of human IL-6Ra domains D2-D3 was constructed in similar fashion with forward primer 50 ATG CAA GGA TCC CCT CCT GGT AGA ATT CCC CCC C (Bam HI site) and reverse primer 50 ATG CAA TCT AGA TCA GTG ATG GTG ATG GTG ATG CAT TTG CCG AAG AGC CCT CAG (Xha I site). All PCR products were sequenced to verify that no mutation had been introduced. The PCR products were digested with Bam HI and Xha I, and subcloned into pAcGP67A (Pharmingen). Production of the recombinant baculovirus was performed as described.20 Briefly, Spodoptera frugiperda (Sf9) cells (Invitrogen) were transfected with a combination of the recombinant transfer vector and linearized AcNPV DNA (BaculoGold, Pharmingen) using CELLFectin (Invitrogen) as described by Pharmingen (San Diego, CA). Baculovirus containing recombinant DNA was amplified in Sf9 cells in serum-containing Sf900 medium. Protein expression, purification and characterization Typical infection with baculovirus was carried out in Insect Express medium (Biowhitaker, Walkersville, MD) at a cell density of 1.5 £ 106/ml for three days. Baculovirus was titrated in small scale (2 ml) to optimize infection parameters prior to the large-scale (1– 6 l) production. The medium containing the expressed recombinant proteins was centrifuged to pellet the cellular debris, concentrated and dialyzed using tangential flow filtration, and allowed to “batch” bind overnight with Ni-NTA beads (Qiagen) at 4 8C on a rotating shaker. Protein was eluted from the Ni-NTA beads with 350 mM imidazole and the fractions visualized by SDS-PAGE. The eluant was further purified by gel-filtration (Amersham Pharmacia Biotech) on a Sephadex 200 column calibrated with apoferritin (443 kDa), a amylase (200 kDa), albumin (67 kDa), carbonic anhydrase (29 kDa), and cytochrome c (12.4 kDa). Protein concentration was determined with the bicinchninic acid (BCA) assay (Pierce, Rockford, Il) using bovine serum albumin as the standard. Native gel analysis of proteins was carried out at pH 8.0 using 10 –15% (w/v) polyacrylamide gels and native gel buffer strips on the PhastSystem (Pharmacia, NJ) described by the manufacturer’s protocol. Gels were stained with Coomassie brilliant blue. Analytical ultracentrifugation analysis Sedimentation equilibrium analysis was carried out in a Beckman Optima XL-A analytical ultracentrifuge equipped with a four-position An-50 Ti rotor and sixchannel centerpieces. Each sample was loaded at three different concentrations with initial A280 nm of about 0.3, 0.6, and 1.2. All samples were centrifuged at 20 8C in Hepes-buffered saline (HBS; 10 mM Hepes (pH 7.2), 150 mM NaCl). The samples were centrifuged to equilibrium at series of incremental speeds between 7000 and 25,000 rpm. The samples were centrifuged at a specified speed for 20 hours and distribution profile scans were taken. After three hours, distribution scans were again taken to ensure that equilibrium had been reached. The data were analyzed using Winnolin 1.06, Windows version of program NONLIN,44 and the details of the data analysis have been described.25 Viral Mimicry of a Human Cytokine Isothermal titration calorimetry (ITC) ITC measurements were carried out using a VP-ITC microcalorimeter (MicroCal LLC. Northampton, MA) as described.26,45 All the protein preparations were purified and exchanged into appropriate buffers with gelfiltration chromatography to control for heat of dilution effects. Protein concentration was determined with the bicinchninic acid (BCA) assay (Pierce, Rockford, Il) using bovine serum albumin as the standard. Each sample was degassed for ten minutes prior to loading into the calorimeter. The binding site molar concentrations of the samples in the sample cell were in the range of 0.5– 10 mM. The equivalent binding site molar concentrations in the injection syringe were at least sevenfold greater than that of the cell. The curves are fit with a least-squares algorithm for a one-site binding model using the software Origin 5.0 (OriginLab, MA). Measurements of ionization enthalpies were carried out as described above but in the following buffers; (Hepes, 4.99 kcal/mol; Pipes, 2.72 kcal/mol; cacodylate, 2 0.47 kcal/mol; a mixture of cacodylate and Tris at pH 7.55 with a composite enthalpy of 3.4 kcal/mol). Cell culture, transfections and plasmids HEK293T cells were grown in minimum essential medium supplemented with 5% (v/v) fetal calf serum. Cells were passaged 12 –24 hours before transfection to obtain subconfluent monolayers (40 – 60% confluency) in six-well tissue culture plates. Transfections were carried out using standard calcium phosphate/DNA coprecipitation with HBS; medium-containing precipitate was changed with fresh medium after eight hours, and cells were harvested 48 hours after medium change. Assays of chloramphenicol acetyltransferase (CAT) activities in cell lysates were carried out as described.31 Generally, 1 mg of effector (pSG5-vIL-6, pSG5-vIL-6.15, or pSG5 (negative control)) and 0.5 mg of receptor expression plasmid(s) (pEFBOS-hIL-6R and/or pEFBOS-hgp130), pEF-BOS (negative control) and pa2MCAT were used. For pEFBOS-hIL-6R and pSG5-hIL-6 dose-response experiments, DNA totals were kept constant by addition of pEF-BOS or pSG5, respectively. Expression vectors for vIL-6 and vIL 6.15 have been described;35 pEFBOS-hIL-6 and pEFBOS-hgp130 vectors comprise the coding sequences of the a and b receptor subunits cloned into pEF-BOS,46 and were provided by Narazaki & Kishimoto; the pa2MCAT reporter has been described47 and was provided by Shaefer. In order to test for autocrine induction of human IL-6 by viral IL-6 (Figure 4(C)), we co-transfected HEK293T cells with gp130 and IL-6Ra expression vectors, the pa2M-CAT reporter, and either vIL-6 or hIL-6 expression constructs (the latter used at different doses). Cells and media were subsequently harvested for determinations of CAT activities in cell extracts, and for detection and quantification of hIL-6 in the culture medium, using Western analysis (Figure 4(C)). In this way, we could correlate hIL-6 levels with reporter activation and determine if functionally significant levels of hIL-6 were present in vIL-6-expressing cultures. Western analysis for detection of hIL-6 Samples of transfected cell medium were analyzed for the presence of hIL-6 by Western blotting. Proteins were size fractionated by SDS-PAGE and transferred 653 Viral Mimicry of a Human Cytokine electrophoretically to nitrocellulose membranes. These were blocked in PBS containing 5% (v/v) non-fat milk prior to the addition of primary antibody to hIL-6 (R & D Systems, Minneapolis, MN; cat no. AB-206-NA) at 0.1 mg/ml and incubation at 4 8C overnight. The membranes were then washed in PBS prior to addition of horse radish peroxidase-conjugated anti-goat IgG detection antibody (Santa Cruz Biotech, Santa Cruz, CA; cat. no. sc-2020) diluted 1:2000 (v/v). Recombinant hIL-6 used as a positive control for Western analysis and to allow quantification of hIL-6 in transfected cell medium, was obtained from R & D Systems (cat. no. 206-IL). 7. 8. 9. Structure analysis Structural analysis including structural superposition of the Ca backbone (Figure 2) of gp130 in the hIL-6 hexameric and vIL-6 tetrameric complexes were carried out with the program O.48 Docking of IL-6Ra onto the core vIL-6/gp130 tetramer was performed following an initial least-squares superposition of the hIL-6/gp130 core onto the vIL-6/gp130 core. 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