Functional MRI (fMRI) For internal use only / Copyright © Siemens AG 2006. All rights reserved. fMRI MRI Page 2 APG / CS / SJKK_120034 fMRI PET MEG NIRS EEG fMRI Page 3 fMRI APG / CS / SJKK_120034 BOLD Blood Oxygen on Level Depending 5% 30 50% Page 4 APG / CS / SJKK_120034 BOLD Blood Oxygen on Level Depending fMRI EPI Echo Planner Imaging 3% ??? Page 5 Baseline Active APG / CS / SJKK_120034 Blocked design t Event related design BOLD 20s 20s t Page 6 APG / CS / SJKK_120034 PC MRI MRI PC MRI PC Page 7 APG / CS / SJKK_120034 t Finger tapping = ON 887.52 830.76 Finger tapping = OFF Page 8 APG / CS / SJKK_120034 GLM general linear model fMRI Y=X BOLD signal HRF model Hemodynamic Response Function) Page 9 Design Matrix APG / CS / SJKK_120034 BOLD fMRI GLM statistic SPM Page 10 APG / CS / SJKK_120034 Mesurement, Paradigm size BOLD TR Slice 1 2 3 4 5 … Baseline Active t Paradigm size = 20 Measurement = 60 Page 11 APG / CS / SJKK_120034 t fMRI 3D PACE Motion Correction S Thensen, : Prospective Acquisition Correction for Head Motion with Image-based Tracking for Real-Time fMRI. ISMRM(2000) Page 12 APG / CS / SJKK_120034 3D PACE measurement measurement Prospective Sequence name ep2d_pace 3D PACE Measurement (n) ep2d_bold Measurement delay FFT Measurement (n+1) Position Update Motion Detection Regridding of residual motion 0,0 s Page 13 1,8 s 4,0 s APG / CS / SJKK_120034 Motion Correction BOLD Retrospective BOLD Page 14 APG / CS / SJKK_120034 Spatial Filter BOLD SNR 2 1 0.5 Page 15 Weak Average Strong APG / CS / SJKK_120034 Delay in TR Delay in TR BOLD TR Delay in TR Delay in TR > 0 Delay in TR = 0 Slice 1 2 3 4 5 TR Page 16 = 1 measurement APG / CS / SJKK_120034 Series Geometry >> Common Series Interleaved Ascending Descending Interleaved ( 10 4 3 2 1 1 2 3 4 10 Interleaved ) ( ) 5 9 4 8 3 7 2 6 1 5 10 4 9 3 8 2 7 1 6 interleave interleave Page 17 APG / CS / SJKK_120034 TR Page 18 APG / CS / SJKK_120034 Mosaic Image fMRI 1 mosaic (all slice) / 1mesurement Page 19 APG / CS / SJKK_120034
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