スライド 1

Supplementary Table 1
siRNA oligonucleotides
siXEDAR
sip53
siFAS
siEGFP
Sense
GCCUGCUAGUGGUGUUUACTT
GACUCCAGUGGUAAUCUACTT
GAAGCGUAUGACACAUUGATT
GCAGCACGACUUCUUCAAGTT
Antisense
GUAAACACCACUAGCAGGCTT
GUAGAUUACCACUGGAGUCTT
UCAAUGUGUCAUACGCUUCTT
CUUGAAGAAGUCGUGCUGCTT
Quantitative real-time PCR
(SYBR Green I Master)
XEDAR
b2-microglobulin
Forward
GGTCCTGGACAGGAGCTATC
TCTCTCTTTCTGGCCTGGAG
Reverse
ACGATTGATGACAGCACAGG
AATGTCGGATGGATGAAACC
Quantitative real-time PCR
(Probes Master)
XEDAR
b2-microglobulin
Forward
CCAACTTTTTGAGGTTCAGCA
TAGGAGGGCTGGCAACTTAG
Reverse
TCACTTCACCTTTACCCGAAA
CCAAGATGTTGATGTTGGATAAGA
ChIP assay
p53BR1
p53BR2
Forward
GCGCTTTCTGAGGTATCAGG
GCAAAGCAAGAGGTTTCAGG
Reverse
TTTCCTAGCCTGGTCTCTGG
ATGCGTACGTGCACAAAGAC
Gene reporter assays
p53BR1
p53BR2
Forward
AAAACGCGTGCGCTTTCTGAGGTATCAGG
AAAACGCGTGCAAAGCAAGAGGTTTCAGG
Reverse
AAACTCGAGTTTCCTAGCCTGGTCTCTGG
AAACTCGAGATGCGTACGTGCACAAAGAC
Bisulfite sequencing analysis
Forward
CpG island in the XEDAR promoter GGAATTTTGATTATAAGGAATTTTATATAT
Reverse
ACACCAAAAAATATTCCCACACT
Semi-quantitative RT-PCR
XEDAR
b2-microglobulin
Forward
TCTTCAACAGACATTGCCAG
CACCCCCACTGAAAAAGATGA
Reverse
CAGTATAGGAGGCAGAGCTG
TACCTGTGGAGCAACCTGC
Mutation analysis in p53 gene
p53_115F
p53_596F
p53_634R
p53_1004F
p53_1052R
p53_1522R
AAGTCTAGAGCCACCGTCCA
TTCTGGGACAGCCAAGTCTG
AAACATCTTGTTGAGGGCAG
CCTCACCATCATCACACTGG
CACGCACCTCAAAGCTGTTC
CAAGGGTTCAAAGACCCAAA
Mutation analysis in XEDAR gene
exon 1
exon 2
exon 3
exon 4
exon 5
exon 6
Forward
AAGCCAAGTGGCATGGAAG
ACAGGTGATCCCATCTCCAA
CCAAGTGCATTGCTTGTTTG
TGACTGTTTACTGCCCATGC
GGCAAGGGAGATGGTATCAA
GGAAAGAATCAGCTCCCAGA
Reverse
GTTTTACCCGCTGAACTGGA
GATGGGAGAAACCTCCAACA
GGGATGAGGAGAAAGGGAAG
ACCCCAGAACATCCCTCTCT
AAACCTCCTGCAACTCGAAG
ATGACAACCTTGCCAGTTCC
Supplementary Table 2
No p53 status
1
mt
2
mt
3
mt
4
mt
5
mt
6
mt
7
mt
8
mt
9
mt
10
mt
11
mt
12
mt
13
mt
14
wt
15
wt
16
wt
17
wt
18
wt
19
wt
20
wt
No
1
2
3
4
5
6
Colon cancer cell lines
DLD-1
HCT-15
HT-29
KM12C
KM12SM
NCI-H508
NCI-H716
SNU-C2A
SNU C5
SW480
SW620
SW948
WiDr
HCT 116
LoVo
LS 174T
NCI-H498
RKO
SNU C4
SW48
Normal cell lines
HEK293
HMEC
HUVEC
NHDF
NHEK
SAEC
No
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
No p53 status
1
mt
2
mt
3
mt
4
mt
5
mt
6
mt
7
mt
8
mt
9
mt
10
mt
11
mt
12
mt
13
mt
14
mt
15
mt
16
mt
17
wt
18
wt
19
wt
20
wt
21
wt
22
wt
Normal tissues
Brain
Heart
Liver
Lung
Kidney
Stomach
Pancreas
Testis
Placenta
Prostate
Bone Marrow
Spleen
Trachea
Thymus
Colon
Small Intestine
Ovary
Bladder
Mammary Gland
Spinal Cord
Lymph Node
Skeletal Muscle
Thyroid
Pituitary Gland
Aorta
peripheral blood
Breast cancer cell lines
MDA-MB-157
MDA-MB-435S
MDA-MB-453
OCUB-F
BT-474
BT-20
BT-549
HCC1395
HCC1143
HCC1599
HCC1937
SK-BR-3
T-47D
BSY1
HBC5
MDA-MB-231 (HTB-26)
HCC1500
ZR-75-1
YMB-1
HBC4
HBL-100
MCF7
No p53 status
1
mt
2
mt
3
mt
4
mt
5
mt
6
mt
7
mt
8
mt
9
mt
10
mt
11
mt
12
mt
13
mt
14
mt
15
mt
16
mt
17
mt
18
mt
19
mt
20
mt
21
mt
22
mt
23
mt
24
mt
25
mt
26
mt
27
mt
28
wt
29
wt
30
wt
31
wt
32
wt
33
wt
34
wt
35
wt
Lung cancer cell lines
DMS 114
DMS 273
LC174
NCI-H358
NCI-H522
Pc-3
SK-LU-1
SK-MES-1
PC14
PERF-LC-AI
NCI-H1703
EBC-1
LU61
SBC-5
NCI-H1299
NCI-H446
NCI-H196
NCI-H1650
NCI-H1781
NCI-H2170
NCI-H23
NCI-H520
NCI-H647
LX1
PC14PE6
RERF-LC-AI
SW900
A549
LC176
LU99A
LU99B
NCI-H460
SBC-3
A427
SW1573