Han Fang Contact Information 257 Berry Hill Rd Syosset, NY 11791 Research Interests Genomics, Human Genetics, Algorithm Development Education Stony Brook University (SBU) • Ph.D, Applied Mathematics & Statistics (AMS) • M.S, Applied Mathematics & Statistics Sun Yat-Sen University (SYSU) • B.S, Optical Informatics Experience PhD Student - Research Assistant 2014 - present Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory (CSHL) Advisors: Dr. Michael C. Schatz & Dr. Gholson J. Lyon Computational Science Analyst 2013 - 2014 Stanley Institute for Cognitive Genomics, CSHL Supervisor: Dr. Gholson J. Lyon Teaching Assistant Fall 2012 AMS 315 - Data Analysis, Department of AMS, SBU Awards Travel Awards • SBU Research Access Project Award • SBU Travel Grant Student Scholarship • SBU Tuition Scholarship • SYSU Scholarship Expertise Peer-reviwed Journal Publications 631-413-7226 [email protected] Stony Brook, NY Expected: 2017 2013 Guangzhou, China 2011 2012 2012 2014 2010 Programming & Scripting: • Python, C++, R • Latex, SAS, HTML, familiar with UNIX, SGE/UGE environment Language: • English, Mandarin, Cantonese, Teochew 1. Fang H, Wu Y, Narzisi G, O’Rawe JA, Jimenez Barron LT, Rosenbaum J, Ronemus M, Iossifov I, Schatz MC*, Lyon GJ*, ”Reducing INDEL calling errors in whole genome and exome sequencing data.”, Genome Medicine (2014) doi:10.1186/s13073-014-0089-z 2. Narzisi G*, O’Rawe JA, Iossifov I, Fang H, Lee Y, Wang Z, Wu Y, Lyon GJ, Wigler M, Schatz MC, ”Accurate detection of de novo 1 of 3 and transmitted INDELs within exome-capture data using microassembly.”, Nature Methods (2014) doi:10.1038/nmeth.3069 3. O’Rawe JA, Fang H, Rynearson S, Robison R, Kiruluta ES, Higgins G, Eilbeck K, Reese MG, Lyon GJ*, ”Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.”, PeerJ (2014) doi: 10.7717/peerj.177. 2013 Manuscripts in Preparation 1. Fang H, Wu, Y, Jimenez Barron LT, O’Rawe, JA, Highman, G, Mittleman, D, Lyon, GJ*, Whole genome analysis of an extended pedigree with PraderWilli syndrome, hereditary hemochromatosis, familial dysautonomia, Tourette syndrome and other illnesses. 2. O’Rawe JA, Wu Y, Rope A, Jimenez Barron LT, Swensen J, Fang H, Mittelmann D, Highnam G, Robison R, Wang K, Lyon GJ*, ”Comprehensive whole genome sequencing of a three generation pedigree: Genetic components of a new syndrome with severe developmental delay and dysmorphic features”. Conference Platform Presentations 1. Reducing INDEL calling errors in whole genome and exome sequencing data. CSHL Biological Data Science Meeting, Cold Spring Harbor, NY (2014) Internal Seminars 1. Reducing INDEL calling errors in whole genome and exome sequencing data. CSHL Quantitative Biology Seminar, Cold Spring Harbor, NY (2014) 2. Complexities of INDEL detection based on micro-assembly methods; WGS & WES comparisons. CSHL Genome Center Seminar, Cold Spring Harbor, NY (2014) Conference Posters 1. Reducing INDEL calling errors in whole genome and exome sequencing data. CSHL Personal Genomes Meeting, Cold Spring Harbor, NY (2014) 2. Whole genome analysis of an extended pedigree with PraderWilli syndrome, hereditary hemochromatosis, familial dysautonomia, Tourette syndrome and other illnesses. CSHL Personal Genomes Meeting, Cold Spring Harbor, NY (2014) 3. Reducing INDEL calling errors in whole genome and exome sequencing data. American Society of Human Genetics Annual Meeting, San Diego, CA (2014) 2 of 3 4. Complexities of INDEL detection based on micro-assembly methods; WGS and WES comparisons. CSHL Biology of Genome Meeting, Cold Spring Harbor, NY (2014) 5. Whole genome sequencing analysis of a family with familial dysautonomia and neuropsychiatric symptoms. CSHL Personal Genomes Meeting, Cold Spring Harbor, NY (2013) 6. The Statistical Properties of Longitudinal Phenotypes Determined by Trajectory Models in Linkage Analysis of GAW 18 Data. Authored by Ruiqi Zhang, Han Fang, et. al, Genetics Analysis Workshop 18, Stevenson, WA (2012) 3 of 3
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